PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035204001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARF
Protein Properties Length: 487aa    MW: 54607 Da    PI: 8.2466
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035204001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.31.2e-22128230199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                        f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+  ++++r++lt+GW+ Fv+a++L +gD+v+F  
  GSVIVT01035204001 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFrGRQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 216
                        99*****************************8544444..48****************97788889*************************. PP

                        -SSSEE..EEEEE-S CS
                 B3  85 dgrsefelvvkvfrk 99 
                         ++++ +l+++++r+
  GSVIVT01035204001 217 -WNEKNQLLLGIRRA 230
                        .8899999****997 PP

2Auxin_resp120.81e-39255338183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras+seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  GSVIVT01035204001 255 AAHAAATNSCFTIFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 338
                        79********************************87599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-49111258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-41121244IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-20127229No hitNo description
SMARTSM010191.1E-22128231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266128231IPR003340B3 DNA binding domain
PfamPF023627.0E-21128230IPR003340B3 DNA binding domain
PfamPF065071.4E-34255338IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MKLSTSGLGQ QQGHEGEKKC LNSELWHACA GPLVSLPTVG SRVVYFPQGH SEQVAATTNK  60
EVDGHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD TFLPVELGIP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF  180
RHIFRGRQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA TRPQTVMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSCFTIFYN PRASPSEFVI PLSKYVKAVF HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSL FPLRLKRPWH PGASSLHDSR DEAANGLMWL RGETGDQGLQ SLNFQTVGMF  420
PWTQQRLDPT FLGNDHNQQY QAMLAAGLQN LGSGDPLKQQ YMQFQQPFQY LQQTGSNNPL  480
IISDSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631835948388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.120200.0flower| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266678.20.0PREDICTED: auxin response factor 8
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLV7BBY20.0V7BBY2_PHAVU; Auxin response factor
STRINGGLYMA14G38940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8561456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8